Conference proceedings

Computational Breakthroughs In Aquatic Taxonomy: The Role Of Deep Learning And DNA Barcoding

Aquatic Ecosystems
Deep Learning
Taxonomic Identification
Metagenomic Sequences
Environment Modeling
Machine Learning

Aquatic ecosystems are crucial in maintaining environmental equilibrium and sustaining human well-being. However, the traditional manual methods used in hydrobiological research have limitations in providing a far-reaching understanding of these intricate ecosystems. Data science, machine learning, and deep learning techniques offer a variety of opportunities to overcome these limitations and unlock new insights into aquatic environments. This study highlights the impact of computational tools in areas such as taxonomic identification, metagenomic sequence analysis, and water quality prediction. Deep learning techniques have demonstrated superior accuracy in classifying organisms, including those previously unidentified by conventional methods. In metagenomic sequence analysis, machine learning aids in effectively ssembling DNA sequences, aligning them with known databases, and addressing challenges related to sequence repeats, errors, and missing data. Furthermore, predictive models have been developed to provide insights into water quality parameters, such as eutrophication events and heavy metal concentrations. These advancements lead to informed conservation measures and a deep understanding of the intricate relationships within aquatic ecosystems. However, challenges persist, including data quality issues, model interpretability, and the need for robust training datasets. Thus, data integration strategies designed specifically for environmental and genomic studies are necessary. Data fusion and imputation can help address data scarcity and provide a comprehensive view of hydrobiological processes. As the study of aquatic ecosystems continues to evolve, the synergy between computational methods and traditional hydrobiological techniques holds immense potential. By everaging the power of data science and cutting-edge technologies, researchers can gain a deep understanding of aquatic environments, monitor changes in biodiversity, and develop informed strategies for sustainable management amidst global environmental shifts.

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18 publications found

2021
Conference proceedings

Oxidative Damage In Zebrafish Exposed To Environment Realistic Concentrations Of Roundup And Chlorpyrifos

Publisher: International Multidisciplinary Scientific GeoConference

Authors: Halina Falfushynska, Nadiia Kasianchuk, O. Bodnar, O. Horyn, I. Khatib

2024
Journal article

The Resilience Of Ukrainian Scientists

Publisher: Cell Systems

Authors: Oksana Piven, Valerii Pokrytiuk, Nadiia Kasianchuk, Bohdan Ostash, Svitlana Dekina, Rostyslav Panchuk, Oleksiy Boldyriev, Vitalina Bashynska, Andrii Zaremba, Yuliia Faidiuk, Maria Yu Obolenskaya, Anastasiia Polishchuk, Oleksandr Petrenko

2020
Journal article

Вивчення Ефективності Хлорели Щодо Зменшення Цитотоксичних Проявів У Смугастого Даніо За Впливу Органофосфатних Пестицидів

Publisher: Наукові записки Тернопільського національного педагогічного університету імені Володимира Гнатюка

Authors: Nadiia Kasianchuk, O. Bodnar, S. Senko, I. Osypenko, I. Khatib, Halina Falfushynska

2023
Conference proceedings

Random Forest Algorithm in Unravelling Biomarkers of Breast Cancer Progression

Publisher: Anhalt University

Authors: Nadiia Kasianchuk, Dmytro Tsvyk, Eduard Siemens, Halina Falfushynska

2023
Conference proceedings

Scrutinised And Compared: HVG Identification Methods In Terms Of Common Metrics

Publisher: ICAIIT

Authors: Nadiia Kasianchuk, Yevhenii Kukuruza, Vladyslav Ostash, Anastasiia Boshtova, Dmytro Tsvyk, Matvii Mykhailichenko

2024
Conference proceedings

Network analysis identified novel disease module in rheumatoid arthritis

Publisher: Biopolymers and Cell

Authors: Nadiia Kasianchuk, P. Fau, A. Romanenko, A. Kompaniiets, P. Havrysh, Matvii Mykhailichenko, D. Nishchenko, F. Iordachi, O. Petrenko

2023
Journal article

The Biomedical Potential Of Tardigrade Proteins: A Review

Publisher: Biomedicine & Pharmacotherapy

Authors: Nadiia Kasianchuk, P. Rzymski, Kaczmarek

2024
Journal article

Illicit Drugs in Surface Waters: How to Get Fish off the Addictive Hook

Publisher: Pharmaceuticals

Authors: Nadiia Kasianchuk, Halina Falfushynska, Yuliia Faidiuk, P. Rzymski, Anastasiia Boshtova, Piotr Rychter

2023
Conference proceedings

Genomic Data Machined: The Random Forest Algorithm for Discovering Breast Cancer Biomarkers

Publisher: Information and Communication Technologies and Sustainable Development

Authors: Vladyslav Ostash, Halina Falfushynska, Eduard Siemens, Dmytro Tsvyk, Nadiia Kasianchuk

2023
Journal article

Gene‑Editing And RNA Interference In Treating Hepatitis B: A Review

Publisher: Viruses

Authors: Nadiia Kasianchuk, Krystyna Dobrowolska , Sofiia Harkava, Andreea Bretcan, Dorota Zarebska-Michaluk, Jerzy Jaroszewicz, Robert Flisiak, Piotr Rzymski