Computational Breakthroughs In Aquatic Taxonomy: The Role Of Deep Learning And DNA Barcoding
Year:
2024Published in:
ICAIITAquatic ecosystems are crucial in maintaining environmental equilibrium and sustaining human well-being. However, the traditional manual methods used in hydrobiological research have limitations in providing a far-reaching understanding of these intricate ecosystems. Data science, machine learning, and deep learning techniques offer a variety of opportunities to overcome these limitations and unlock new insights into aquatic environments. This study highlights the impact of computational tools in areas such as taxonomic identification, metagenomic sequence analysis, and water quality prediction. Deep learning techniques have demonstrated superior accuracy in classifying organisms, including those previously unidentified by conventional methods. In metagenomic sequence analysis, machine learning aids in effectively ssembling DNA sequences, aligning them with known databases, and addressing challenges related to sequence repeats, errors, and missing data. Furthermore, predictive models have been developed to provide insights into water quality parameters, such as eutrophication events and heavy metal concentrations. These advancements lead to informed conservation measures and a deep understanding of the intricate relationships within aquatic ecosystems. However, challenges persist, including data quality issues, model interpretability, and the need for robust training datasets. Thus, data integration strategies designed specifically for environmental and genomic studies are necessary. Data fusion and imputation can help address data scarcity and provide a comprehensive view of hydrobiological processes. As the study of aquatic ecosystems continues to evolve, the synergy between computational methods and traditional hydrobiological techniques holds immense potential. By everaging the power of data science and cutting-edge technologies, researchers can gain a deep understanding of aquatic environments, monitor changes in biodiversity, and develop informed strategies for sustainable management amidst global environmental shifts.
Related by author
19 publications found
Network analysis identified novel disease module in rheumatoid arthritis
Publisher: Biopolymers and Cell
Authors: Nadiia Kasianchuk, P. Fau, A. Romanenko, A. Kompaniiets, P. Havrysh, Matvii Mykhailichenko, D. Nishchenko, F. Iordachi, O. Petrenko
The Biomedical Potential Of Tardigrade Proteins: A Review
Publisher: Biomedicine & Pharmacotherapy
Authors: Nadiia Kasianchuk, P. Rzymski, Kaczmarek
Illicit Drugs in Surface Waters: How to Get Fish off the Addictive Hook
Publisher: Pharmaceuticals
Authors: Nadiia Kasianchuk, Halina Falfushynska, Yuliia Faidiuk, P. Rzymski, Anastasiia Boshtova, Piotr Rychter
COVID‑19 Vaccinations And Rates Of Infections, Hospitalizations, ICU Admissions, And Deaths In Europe During SARS-CoV‑2 Omicron Wave In The First Quarter Of 2022
Publisher: Journal of Medical Virology
Authors: Nadiia Kasianchuk, Dominika Sikora, Barbara Poniedziałek, P. Rzymski
Random Forest Algorithm in Unravelling Biomarkers of Breast Cancer Progression
Publisher: Anhalt University
Authors: Nadiia Kasianchuk, Dmytro Tsvyk, Eduard Siemens, Halina Falfushynska
Genomic Data Machined: The Random Forest Algorithm for Discovering Breast Cancer Biomarkers
Publisher: Information and Communication Technologies and Sustainable Development
Authors: Vladyslav Ostash, Halina Falfushynska, Eduard Siemens, Dmytro Tsvyk, Nadiia Kasianchuk
Oxidative Damage In Zebrafish Exposed To Environment Realistic Concentrations Of Roundup And Chlorpyrifos
Publisher: International Multidisciplinary Scientific GeoConference
Authors: Halina Falfushynska, Nadiia Kasianchuk, O. Bodnar, O. Horyn, I. Khatib
Blue On Red: Chemical Conditions Of Liquid Water Emerging On Simulated Martian Regolith
Publisher: Icarus
Authors: Piotr Rzymski, Piotr Klimaszyk, Nadiia Kasianchuk, Paulina Jakubiak, Jędrzej Proch, Przemysław Niedzielski
The Resilience Of Ukrainian Scientists
Publisher: Cell Systems
Authors: Oksana Piven, Valerii Pokrytiuk, Nadiia Kasianchuk, Bohdan Ostash, Svitlana Dekina, Rostyslav Panchuk, Oleksiy Boldyriev, Vitalina Bashynska, Andrii Zaremba, Yuliia Faidiuk, Maria Yu Obolenskaya, Anastasiia Polishchuk, Oleksandr Petrenko
SARS-CoV‑2 Wastewater Genomic Surveillance: Approaches, Challenges, And Opportunities
Publisher: Genome Biology
Authors: Viorel Munteanu, Michael A. Saldana, David Dreifuss, Wenhao O. Ouyang, Jannatul Ferdous, Fatemeh Mohebbi, Jessica Schlueter Roseberry, Dumitru Ciorba, Viorel Bostan, Victor Gordeev, Nicolae Drabcinski, Justin Maine Su, Nadiia Kasianchuk, Nitesh Kumar Sharma, Sergey Knyazev, Eva Aßmann, Andrei Lobiuc, Mihai Covasa, Keith A. Crandall, Nicholas C. Wu, Christopher E. Mason, Braden T. Tierney, Alexander G. Lucaci, Roel A. Ophoff, Cynthia Gibas